Department of Microbiology
 

Web Sites for Genomic Sequence Analysis

MB(GN) 758 Genome Project Site

NCBI: National Center for Biotechnology Information

NCBI Home Page

Entrez

PubMed MedLine

Nucleotide Database

Protein Sequence Database

NCBI Complete Genome Database

Taxonomy Browser

GenBank Overview

Searching GenBank

BLAST - all forms

BLAST Overview

BLAST Tutorial

Sequence Submission to GenBank

Genome Databases

NCBI Complete Genome Database

The Institute for Genomic Research (TIGR)

Washington University Human Genome Site

E. coli Database

Colibri: E.coli at the Pasteur (links to Mycob., Helicobacter, etc.)

EcoGene Web Site

EcoCyc: E. coli Metabolism

KEGG: Metabolism and Pathways

T4-type Phage Genomes

Bacillus subtilis Database

Yeast Genome

VISTA: Comparative Genome Analysis

National Center for Genome Resources

Human Genome Database @ Johns Hopkins

Mycobacterium Database

Mycoplasma pneumoniae Database

The EMBL

Genomic Resources at Stanford

Databases & Protocols in Genomics / Washington Univ. Genome Center

Comprehensive Resources & Tools

Great Online Analysis Resource Site

ExPasy

ExPasy - The Tools

EMBL - European Biotechnology Institute

Pedros BioMolecular Software Tools

The IUBio Molecular Biology Archive (SeqPup, SeqApp, etc.)

BioEdit for the PC

Zurich Informatics Site

DNA Sequence Analysis Sites

WebCutter Restriction Site Analysis

Online Primer Selection Program

Mutability

Mutability Help

SeqPup - Macintosh Sequence Analysis Software

REBASE Restriction Enzyme Site

NCBI ORF Finder

GeneFinder and other Baylor resources

GeneMark Home Page (Gene Finding)

GrailEXP Gene Prediction

NCSU DNA Sequencing Center

LOGO: Information Theory, Walker Program and Molecular Recognition

Web LOGO Generator

CSH DNA Learning Center

RNA Analysis & Databases

Codon Usage Tables

RNA Structure LOGO

Zuker's RNA/DNA Analysis Site

Zuker's mFOLD RNA Folding Web Site

Ribosomal RNA Database Project: alignments, tree building, etc.

Noncoding RNA Database

Nucleic Acid Database (NADB)

Ribonuclease P Database

tmRNA Website

TransTermHP - Termination Sites Program to download

TransTerm - mRNA analysis online

Intron Database

SRP Database

The RNA Society

The RNA Society of North Carolina

Codon Table and more

Proteins: Sequence & Structure Analysis

NCBI Protein Sequence Database

NCBI Molecular Modeling Database

Protein Motif Searches

Baylor Protein Sequence / Pattern Searches

PROSITE Pattern Searches

Protein Database (PDB)

SWISS-PROT Protein Database

NNPredict Protein Structure

Predator: Protein Structure Prediction

PredictProtein Web Site

Predict Protein (ESPript postscript printing)

Molecular Modeling at NCBI

Swiss-PdbViewer

SWISS-MODEL Protein Folding

ModBase: Comparative Protein Models

Dali Protein Structure Comparison

3D viewing, analysis software (Kinemage, etc.)

Protein Explorer / RasMol

MolView

MEROPS Peptidase Database

Protein Science

Multiple Sequence Alignment & Phylogeny

University of Washington - PHYLIP

CLUSTALW at EMBL

ONLINE TOOLS with LALIGN

BOXSHADE at Pastuer

MultAlin by F. Corpet

VSNS Multiple Alignment Resource

WebLogo Generator

CSH Bioservers Resource, Alignments, etc.

TreeView tree drawing software

NCSU Computational Molecular Evolution (GN556/ST556) Course

Metabolic Pathways and Reconstructions

Kegg: Genes, Genomes and pathways

E. coli Metabolism and Pathways

EcoGene Web Site

EcoCyc: E. coli Metabolism

Strain Collections, Funding Agencies and Miscellaneous Sites

American Type Culture Collection

World Data Centre for Microorganisms

E. coli Stock Center

Salmonella Stock Center

Michigan State University Microbial Ecology Center

American Society of Microbiology (ASM)

Microbe Library

Life in Extreme Environments

MicrobeWorld

Virology Mega-site

FASEB

NIH

NSF

USDA

The Smithsonian Institution

NCSU Journals Search

Periodic Table of the Elements

GCG Wisconsin Package: Online Help, Utilities & UNIX

GCG & SeqWeb at NCSU was inactivated in 2006; the NC BioPortal may host it

Getting Started with GCG

GCG HTML Help Manual

Genetics Computer Group - the Company

GCG FAQs

UNIX Survival Kit

UNIX Help for Users

NCSU IT Training Materials

Companies

For Reagents and Resources

Affymetrix GeneChip Systems

SciQuest Product Search

NEB: New England Biolabs

Integrated DNA Technologies

Eppendorf

Invitrogen

Perkin-Elmer

Amersham Biosciences

Promega Corporation

Molecular Probes

Carolina Biological Supply

ScienceJobs.com

 

Utilities to Download

MI/X , a free Xwindows emulator for GCG SeqLab

PowerLan (eXodus) XWindows Software

TuCows ShareWare

Ghostscript, a Postscript Viewer

MB(GN) 758 Home Page

Visit the NC State Department of Microbiology Home Page