Everything T4
T4
Genomics at
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Complete 168,903 bp genome, GenBank
accession AF158101 (updated 3/29/03)
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Genome viewer, entry NC_000866 (updated 3/29/03)
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FastA and flatfile formats of genes
and proteins (updated
3/29/03)
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Bacteriophage T4 Genome
Microbiol Mol Biol Rev. 67:86-156 (3/2003; subscription needed until 3/2004)
T4
& T4-type Phage Genomics World-Wide
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T4 Codon usage table: The codon usage table here uses the
274 CDS's of GenBank file AF158101
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T4 Codon usage table in GCG format: This table also uses the 274 CDS's of
GenBank file AF158101
o
Yasukazu Nakamura's codon usage tables:
The source Tables generated will use all CDS's in GenBank,
even multiple entries (caution!) of the same CDS. T4 is retrieved using
"coliphage T4".
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T. Kunisawa's T4 FastA sequence files (not recently updated)
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Text files that will
open directly or download depending on your browser configuration
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T4 genome coordinate file Also see: Miller, E.S., E. Kutter, G.
Mosig, T. Kunisawa, F. Arisaka and W. Rüger. 2003. Bacteriophage T4 genome.
Microbiol Mol Biol Rev. 67:86-156.
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Click here for a Tab-delimited file
of the T4 CDS table. Useful
for spreadsheet programs
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tRNA database for T4 tRNA properties
Use "T4" in organism search.
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Genomes of T4-type Phages: A growing compilation of genome
sequences for relatives of bacteriophage T4
Viral COG (VOG) - clusters of related
viral proteins
KVP40
Vibrio phage complete genome (a joint project between NC State Univ. & TIGR researchers)
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Complete 244,835 bp genome, GenBank
accession AY283928.1 (updated
8/29/03)
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KVP40 genome graphics browser at NCBI
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KVP40 genome browser at NCBI
(FastA protein, DNA and RNA files)
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KVP40 CDS Map (pdf)
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KVP40 genome paper, J. Bacteriol.
2003 (pdf), or the PubMed Abstract
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KVP40 genome browser at Tulane
University (kindly formatted and displayed by Jim Nolan)
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PubMed citations on vibriophage KVP40, infecting V. cholerae, V. parahaemolyticus, and others.
Phage
Genome PubMed Searches
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2000 – early
2004
T4
Web Resources
Phage Discussion Forum
Phage Therapy, T4 links and research
labs
Phage Ecology Group
Taxonomy and images of T4-related myoviridae
The Molecular Biology of
Bacteriophage T4 (ASM Press)
Myoviridae images
Phage
Resources
ASM's Division M (Bacteriophage) Page
Pittsburgh Bacteriophage Institute
Phage-Tech Interest Group (PhTIG)
Virus Taxonomy
Felix D'Herelle and the Origins of
Molecular Biology
Virology on the WWW
Eric Miller's Home Page
NC State Univeristy Department of Microbiology Home
Page
NC State University
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This
site maintained by Eric Miller
Comments on this instructional site should be sent to eric_miller@ncsu.edu
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